JMP Clinical Files Are Identified by Suffixes

Typical analyses in JMP Clinical often generate a large number of output files and data sets. This is especially true when input and output files are contained with the same folder, when a report produces multiple output files, or when the same output folder is used for multiple report. If any or all of these conditions occur, the number of files in a folder can multiply dramatically. How do you identify and distinguish between the different files? More importantly, how do you prevent overwriting existing files with the output of subsequent reports, particularly when all of the files tend to be similarly named?

JMP Clinical adds a unique suffix to each output file generated by a report. Suffixes are specific to each report and are dependent on the type of content contained in the file. These suffixes enable you to identify different output files and to correlate them with specific reports. All of the suffixes used by JMP Clinical are listed alphabetically in the table below. Each suffix is defined both by the report that generates it and by the contents of the file that carries it.

Note: Even with the suffixes, it is still possible to overwrite existing files. You should take care to specify different names for output files when doing multiple runs with the same input files. Alternatively, you can specify different output folders.

JMP Clinical Files have suffixes: Identification of output files by suffix, report, and contents.

File Suffix

Reports Generating the File

Function/Contents of the File

_amc

ANOVA
Mixed Model Analysis

Output data set listing response and standardized residuals for each transcript cluster

_amr

ANOVA

Output data set listing annotation information and various statistics for the most significant markers

_amr_sig

ANOVA

Output data set containing the significant differences

_ars

ANOVA
One-Way ANOVA
Mixed Model Analysis

Output data set listing standardized residuals for each observations in the input data set

_box

Distribution Analysis

Output data set listing the relative densities of spots on each array grouped by similar responses; used for drawing box plots

_den

Distribution Analysis

Output data set used for plotting the overlaid kernel density estimate plot

_dge

Distribution Analysis

Output experimental design data set when using Group variables

_dgm

Distribution Analysis

Output data set when using Group variables

_dss

Subset

Output subset data set

_owa

One-Way ANOVA

Output data set containing annotation data, and statistics on individual experiments and pairwise comparisons

_owa_sig

One-Way ANOVA

Output data set containing the significant differences