where F(x) is the cumulative distribution function of the standard logistic distribution
For r response levels, JMP fits the probabilities that the response is one of r different response levels given by the data values. The probability estimates must all be positive. For a given configuration of X’s, the probability estimates must sum to 1 over the response levels. The function that JMP uses to predict probabilities is a composition of a linear model and a multi-response logistic function. This is sometimes called a log-linear model because the logs of ratios of probabilities are linear models. JMP relates each response probability to the rth probability and fit a separate set of design parameters to these r - 1 models.
The fitting principle is called maximum likelihood. It estimates the parameters such that the joint probability for all the responses given by the data is the greatest obtainable by the model. Rather than reporting the joint probability (likelihood) directly, it is more manageable to report the total of the negative logs of the likelihood.
The nominal model can take a lot of time and memory to fit, especially if there are many response levels. JMP tracks the progress of its calculations with an iteration history, which shows the negative log-likelihood values becoming smaller as they converge to the estimates.
The R2 statistic measures the portion of the uncertainty accounted for by the model, which is
However, it is rare in practice to get an R2 near 1 for categorical models.

Help created on 9/19/2017