Statistical Genetics and Genomics

Step-by-Step Guides

• Genetic Association with JMP Genomics Blog Series: NEW!
• Expression Analysis with JMP Genomics Blog Series: NEW!
• Cross Evaluation and Progeny Simulation with JMP Genomics Blog Series: NEW!

• Step-by-Step Guide for Genetics QK Modeling #1: K Matrix and Relatedness Measures
• Step-by-Step Guide for Genetics QK Modeling #2: Population Structure PCA
• Step-by-Step Guide for Genetics QK Modeling #3: Association Analysis
• Step-by-Step Guide for Genetics QK Modeling #4: Using a Workflow
• Step-by-Step Guide for Genetics QK Modeling #5: K Matrix Compression

• Step-by-Step Guide for Expression #1: Importing and Transposing
• Step-by-Step Guide for Expression #2: Predictive Modeling with Cross-Validation and Model Comparison for Model Selection
• Step-by-Step Guide for Expression #3: Learning Curves (AR) to Determine Number of Samples Needed
• Step-by-Step Guide for Expression #4: Subset Data and Create a Test Set
• Step-by-Step Guide for Expression #5: Final Model Fit and Performance on Test Set

• Step-by-Step Guide for Importing Expression Data into JMP Genomics
• Step-by-Step Guide for Importing Genetics Data into JMP Genomics
• Additional Step-by-Step Guides

In-Depth Recorded Webinars

• An Overview of JMP Genomics: Expression, GWAS, Progeny Simulation, and Predictive Modeling
• Genomic Selection for Plant Breeding
• Modern Genomic Crop Improvement
• More recorded webinars from the "Mastering JMP" series

Short How-To Videos

• Getting Started in JMP Genomics – Overview of Studies, Import, and Workflows
• Getting Started in JMP Genomics – Creating the EDF and Importing SAM and BAM files
• Getting Started in JMP Genomics – Using and Interpreting Results from the Basic Expression (RNASeq) Workflow
• Getting Started in JMP Genomics – Move or Share Results

Instructor-Provided Resources

• Jeremy Newman, University of Florida: PCA Teaching Guide
• Departamento Estatística, Universidade Federal de Lavras: Tutorial on Linkage and QTL Mapping, GWAS, and Genomics Prediction Analysis

Other Resources for Teaching and Using JMP Genomics

Collections

• Description of Core Capabilities, plus Corresponding Resources
• Customer Stories
• Research Citations Using JMP Genomics

Specific Topic Resources

• Slides from "Overview of JMP Life Sciences Solutions" at JSM 2019 Technology Workshop
• JMP Genomics for Crop Improvement - Overview of Features
• JMP Blog: The Traveling Salesman Traverses the Plant Genome
• Using SAS Optimization in JMP Genomics to build Genetic Maps

Documentation and Help

• Online Documentation
  • In JMP Genomics, Help > Books > JMP Life Sciences User Guide
• Technical Support
• JMP Discussion Forum
• Contact the JMP Academic Team

One Page Guides and Short How-To Videos for JMP

• JMP Tools:  Video, Guide
• JMP Tables Menu:  Video, Guide
• Saving JMP Results:  Video, Guide, Tutorial
• Saving Publication Quality Graphics with JMP:  Guide for Mac, Guide for Windows
• JMP Graph Builder:  Video, Guide
• Tabulating Data in JMP:  Video, Guide

The complete set of guides and videos can be found at the JMP Learning Library.

Course Materials from the JMP Education Team at SAS*

• JMP Software: Data Exploration
• JMP Software: ANOVA and Regression
• JMP Software: Classic Design of Experiments
• JMP Software: Custom Design of Experiments
• JMP Software: Modern Screening Designs
• JMP Software: Mixture Experiments

*Use of these complementary materials is strictly limited to course use at degree granting academic institutions.  

Complete the Teaching Material Request form to request JMP teaching materials from SAS (scroll down, click on the link to request teaching materials, enter your SAS Profile, then scroll down to see a listing of JMP courses available for download).

Do you want an in-person training course for JMPG?

The JMP Life Sciences Team is considering hosting an in-person training, at the SAS Campus in Cary, NC, on "Using JMP Genomics" in 2018. 

• JMP Genomics Software: Genetics and Breeding Analyses
• JMP Genomics Software: Expression Analysis

If you are interested in attending such a training, please contact us to express your interest and suggest topics and timing (for example, "I am interested in transcriptomics, and I generally have availability for travel in May, June, and November.") We will update this site with more details as soon as possible.