Step-by-Step Guide

Basic Expression Analysis and Normalization with JMP® Genomics 6.0

This document shows you how to perform a basic analysis and normalization of your expression data set. In this example, we examine the GEO data set GSE11352 and track gene expression changes in response to estrogen treatment of MCF7 cells during a time-course experiment using Affymetrix arrays. You will learn how to set up the Basic Expression Workflow and interpret the results, become familiar with different options for normalizing array data, and review additional capabilities for downstream analysis of workflow results.

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