Step-by-Step Guide

QTL Analysis with JMP^® Genomics 5.1

This step-by-step guide introduces quantitative trait loci (QTL) analysis capabilities in JMP Genomics. Using genetic marker data from oat and a linkage map built in JMP Genomics 5.1, this case study illustrates examples of the use of Single Marker Analysis, Interval Mapping (IM), and Composite Interval Mapping (CIM) in the software. You may use the link on this page to download the data sets and follow the detailed instructions in the guide to replicate this analysis in your copy of JMP Genomics 5.1.