Step-by-Step Guide

Relatedness and Association Mapping with JMP^® Genomics 5.1

This step-by-step guide introduces JMP Genomics processes for association mapping, population structure assessment, and calculation of relatedness measures. Genotypes from a diverse set of oat lines are used in Q-K association analysis, where principal components capturing population structure information (Q) and a relationship matrix capturing relatedness among lines (K) are used simultaneously to adjust association tests between markers and traits. You may use the link on this page to download the data sets and follow the detailed instructions in the guide to replicate this analysis in your copy of JMP Genomics 5.1.