Parameters | Import | Normalize copy number data using autosomes

Normalize copy number data using autosomes
Check this option to perform a two-step normalization on copy number intensity data:
First, the observations from non-autosomes (X and Y) are separated from autosomes.
Note: Checking this box disables the parameters corresponding to Baseline Reference for quantile normalization.
To Normalize Copy Number Data Using Non-autosomes:
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