Parameters | Workflows | Perform Missing Genotype by Trait Analysis

Perform Missing Genotype by Trait Analysis
Check this box to test for significant differences in missing genotype proportions between cases and controls, as defined by the selected Binary Trait Variable.
Tip: You can also filter SNPs based on these test results by setting SNPs Minimum Missing Genotype by Trait p-Value on the Filtering tab to a positive value.
To Perform the Missing Genotype by Trait Analysis:
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