GC Score Cutoff

Specify that an individual's genotype for any SNP that has a GC (GenCall) Score less than the value specified is set to missing. By default, genotypes with any GC Score are used.

Note: If a value other than 0 is specified, the GC Score variable must be included in the input file.

To Specify a GC Score Cutoff:

8

Enter a value, between 0 and 1, in the GC Score Cutoff text box.