Output Allele Intensity Data Set

For the Affymetrix Cytogenetics and SNP CEL Input Engines:

Name the SAS data set created from input files and summarized as allele-level intensities for each SNPs.

Note: When this field is left empty, the specified name of the Experimental Design File concatenated with "_snp" is used.

Caution: Names longer than 32 characters are truncated.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

To Specify an Output Allele Intensity Data Set:

8

Specify a Summary Method other than “None” on the Summary tab.

The field is now activated.

8

Enter the name of the data set into the text field.

8

If you change your mind and would like to reset the field, click Clear.

For the Illumina Copy Number Input Engine:

Name the SAS data set containing the X and Y allele intensity measures that are exported from BeadStudio. This data set is created only if both the X and Y columns are exported from BeadStudio and selected to be imported. This data set has 2 rows (one for the A allele, one for the B allele) for each SNP.

Caution: Names longer than 32 characters are truncated.

For detailed information about the files and data sets used or created by JMP Genomics software, see Files and Data Sets.

To Specify an Output Allele Intensity Data Set:

8

Type the name directly into the text field.

8

If you change your mind and would like to reset the field, click Clear.