Illumina

Click a button for importing Illumina data into SAS data sets.

Process

Required Input

Possible Output

Illumina Expression Input Engine

Folder containing an Illumina data file, of one of the following types:

•

Exported

•

Final Report

Output data set

Output EDDS

Output annotation data set

Illumina miRNA Input Engine

Folder containing an Illumina data file, of one of the following types:

•

Exported

•

Final Report

Output data set

Output EDDS

Output annotation data set

Illumina SNP Input Engine

Folder of raw files, of one of the following types:

•

Full Data Table

•

Final Report

•

JMP G Custom Report

Output genotype data set

Output map data set

Illumina Copy Number Input Engine

Folder of raw files, of one of the following types:

•

Full Data Table

•

Final Report

•

JMP G Custom Report

Output data set

Output EDDS

Output allele intensity data set

Output allele intensity EDDS

Illumina Methylation/Genotype IDAT Input Engine

A folder containing:

•

the IDAT files

•

an Experimental Design File (EDF) that indexes the IDAT files

Output data set

Output EDDS

Output SD data set

Output NBeads data set

There are also two processes for converting text, CSV, or Excel data files into SAS data files:

Process	Choose this process for creating a SAS data set from...
Import Individual Text, CSV, or Excel Files	Raw data
Import a Designed Experiment from Text, CSV, or Excel Files	Designed experiments

See Import for other subcategories.