Summarize

These two processes are used for condensing and summarizing next-generation sequencing data.

Process

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Bin Intensities or Read Counts

Binning intensities or read counts stored in rows of a tall SAS data set

Tip: This can be useful to reduce the number of rows in a large data set in preparation for downstream plotting and modeling.

Gene Model Summary

Summarizing position-level intensity data into exon and intron bins as defined by an isoform definition file in UCSC format

Tip: Output from a process such as SAM Input Engine can be used as input for this process.

See Import for other subcategories.