Processes | Genetics | Test for HWE

Test for HWE
Use this parameter to specify the type of test to be performed for HWE.
Available tests are described in the table below:
Perform an exact test using the distribution of genotype counts conditioned on the allele counts (Wiggington, et al., 2005).
Evaluate the significance of the chi -square statistic using Monte Carlo permutations of the alleles while holding the allele counts constant.
Note : P -values are still computed and listed in the output data set.
To Specify the HWE Test to Perform: