JMP Genomics Starter | Genetics | Genetic Marker Statistics

Genetic Marker Statistics
Click on a button corresponding to a genetic marker process. Refer to the table below for guidance.
Exploring several properties of all markers in a data set, in detail, for quality control (QC) and/or selecting markers to be removed from the analysis
Testing for significant differences in missing genotype proportions between cases and controls (or any two groups) for each individual marker
Creating blocks of consecutive SNPs based on those in strong linkage disequilibrium (LD) according to specified thresholds
Calculating various measurements of, and conducting an overall test for, linkage disequilibrium , between pairs of markers
Using a binning algorithm to separate SNPs into bins , and identifying tagSNPs that can be used to represent all SNPs in a bin
Describing and summarizing variations in patterns of linkage disequilibrium (LD) across large DNA regions
See Genetics for other subcategories.