Annotation Analysis -log10(p-Value) Cutoff Affymetrix Array Type Affymetrix GeneChip Array Affymetrix Link Agilent Array Type Alpha AmiGO Database Link Annotation Merge Variables Annotation SAS Data Set Annotation Variables to Keep Applied BioSystems Array Type Category Variable Category Variables Check uniqueness of column names Chromosomal Location Chromosome Class Phenotype Variables Codelink Array Type Compress output data sets Continuous Phenotype Variables Control Levels Custom Track Variable Data Step Statements dbSNP ID dbSNP Link Description Direction of Significance Variables EC Database Link End Enrichment Tests Ensembl Database Link Ensembl ID Entrez Gene ID Entrez Databases Link Entrez Gene Link Entry Delimiter Entry Id Delimiter Enzyme ID (EC number) Experimental Design SAS Data Set Files to Import Filter to Include Annotation Rows Filter to Include Observations Folder of List Files Folder of Raw Files GenBank Accession GenBank Link Gene Description Gene Description Variable Gene ID Gene Identifier Variable Gene Name or Identifier Gene Name Variable Gene/Protein Identifier Gene Set Summary Method Gene Symbol Genome GO ID HGNC (Gene Symbol) Database Link High Color RGB High Hit Total Threshold Homologene ID Variable Illumina Array Type Ingenuity Canonical Pathway Membership Data (CSV file) Ingenuity knowledge Base Ingenuity Server Input GMT File of Gene Sets Input SAS Data Set IPA Entry Point IPA Project Name JSL Output File List Description File Low Color RGB Low Hit Threshold Map Viewer Database Link Maximum Category Length Maximum Column Length Method for Computing Reference Level for Each Gene Middle Color RGB Multiple Testing Method for Adjusting p-Values Number of Bins for Cochran-Armitage Tests Number of Bootstrap or Permutation Samples Number of Genes to Process at a Time Number of Rows to Scan OMIM Database Link OMIM ID Organism Organism-specific code Output Data Set Output Data Set Containing Categories Output Data Set Containing Category Indicators Output Data Set Containing Statistics Output Data Set Name Output File Name Output File Type Output Folder Parse associated gene column Percentile to Use as the Highest Color Value Percentile to Use as the Lowest Color Value Platform Prefix for Output Data Set Names Primary Delimiter Separating Annotation Categories Probe ID Probe Set or Gene ID PubMed Database Link Random Number Seed Rank Transform Continuous Significance Variables for PAGE Tests Reference Sequence Database Link RefSeq ID Row Reference Summary Statistic Secondary Delimiter Server Output Directory Set window size Significance Cutoff Significance Input SAS Data Set Significance Variable Significance Variable Cutoff for Fisher Exact Tests Significance Variables Specify up to 20 IPA observations to upload Standardize Rows based on Reference Group Standard Deviation Start Study Swiss-Prot Database Link Swiss-Prot ID Title of Custom Track Type Type of Gene Identifier UniGene ID UniGene Link Use a proxy server to access the Web Variable Containing IDs Variables by Which to Color Pathways Variables By Which to Merge Annotation Data Variables Defining Analysis Groups Variables Defining Control Sets Variables to Keep in Gene-Level Output Variables to Keep in Output or by Which to Merge Annotation Data Variables to Retain in HTML Data Set Window Size