The
Chromosome Results
tab contains the following elements:
On this plot or any of the other
p
-value plots, simply mouse-over any of the points on the plot to see the marker's label, for example, reference
SNP
ID. When an annotation accession variable is specified when running the process, you can select a point and click on any of the Annotation action buttons (
GenBank Nucleotide
,
UniGene Database
,
AceView Database
, or
dbSNP
) to link directly to the corresponding website to view extensive annotation information about the
locus
.
Also, on this plot or any of the other
p
-value or heterogeneity plots, you can select markers for which to create
forest plots
by clicking on the
Forest Plot
action button. A separate forest plot is created for each selected marker showing the effect estimate (
regression
coefficient or
log odds
ratio, for example) for each individual study along with its confidence interval, and the weight for the study (in this case, the inverse of the effect estimate's
variance
) is represented by the size of the square. A red diamond is centered at the overall estimate with width extending the length of the confidence interval, as shown for marker SNP rs560887 (circled above) below: