Illumina SNP Input Engine

Running this process for the subset of the Human1_118dna_109365snps_FinalReport example generates the Results window shown below. Refer to the Illumina SNP Input Engine process description for more information.

The Results window contains the following elements:

Output Data

This process generates the following data sets:

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Genotype Data Set : This data set contains the genotype data. Genotype data is in the Genotypic format, with two alleles , separated by a “ / ” delimiter, in one column. Note : In this example, this data set is too large to conveniently open in JMP. You should click View Subset to view an .html file listing the first 100 rows of the data set.

•	Map Data Set : This data set lists map data and other information for each of the SNPs in the study. Note : The SNPs are listed in rows in this data set.

Note : You can view the data in a file or data set by clicking either Open or View Subset (when the data set is very large).

Launch Follow-up Processes

•	: Click to launch the Basic Genetics Workflow process with the output data set and the EDDS specified as input.

General

•	Click Reopen Dialog to reopen the completed process dialog used to generate this output.

•	Click Close All to close all graphics windows and underlying data sets associated with the output.