Parameters | Genetics | Weight the MDS Fit Based on Recombination Fractions

Weight the MDS Fit Based on Recombination Fractions
Check this option to generate weights for markers in fitting an order in the MDS algorithm.
The weights generated are equivalent to 1-recombination for each pairwise marker set. This has the effect of weighting markers that are closer (having lower recombination between them) to be more important in determining the fit of the order and can increase the accuracy of the fit.
To Specify This Option:
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