Parameters | Import | Copy Number Data Set

Copy Number Data Set
Name the SAS data set created from input files.
When this field is left empty , the specified name of the Output Experimental Design Data Set concatenated with " _data " is applied.
Caution : Names longer than 32 characters are truncated.
The Copy Number Data Set includes the following columns:
The chromosome display values (1-22, X, Y, and MT) are stored in the data set header. The values in this column are defined as:
1 - 22 , 24 (for X), 25 (for Y), 26 (for MT) and 255 (for no value).
Log 2 ratio (signal / median of Reference signal).
Running median of log 2 ratios for n markers (default: n = 5).
Each value is the result of a kernel smooth over a window of genomically contiguous log 2 ratios. By default, this is converted to a copy number value using a log-linear model that fits each CN state to its expected log 2 ratio. This is useful for seeing mosaics.
For detailed information about the files and data sets used or created by JMP Life Sciences software, see Files and Data Sets .
To Specify a Copy Number Data Set: