Click on a button corresponding to a
genome browser
process. These processes are summarized below.
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Adjusting columns of
p-values
for multiple testing or plotting adjusted and optionally transformed
p
-values using chromosomal positions. Results can be journaled by a group such as
chromosome
or candidate gene. The output data set also contains
variables
indicating significance and number of consecutive significant
p
-values according to the specified
alpha
level. A graphic representation of the gene can be overlaid onto the
p
-value plot for exploring the significance and potential mechanism of differential
expression
.
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Creating a settings (
.sas
) file from a text file that defines a Chromosome Color Theme. This file can be used for displaying the Chromosome Color Plot in the
JMP Genomics Browser
process.
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Creating an
.html
table with links to the UCSC Genome Browser based on locations, gene names, or other parameters. This process enables you to create a custom track for upload to the UCSC Genome Browser by specifying a quantitative variable of interest from an analysis performed in JMP Genomics.
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See
Genome Views
for other subcategories.