Parameters | Genetics | Linkage Phase Data Set

Linkage Phase Data Set
Use this field to specify the full path and name to the Linkage Phase SAS data set.
This data set must contain the elements of the lower triangle matrix of pairwise recombination fraction between markers and the elements of the lower triangle matrix of pairwise LOD values. This data set must contain the variables (columns) listed in the table below:
These four variables contain recombination fractions that correspond to the four linkage phase combinations: cis-cis, cis-trans, trans-cis, and trans-trans.
These four variables contain LOD values correspond to the four linkage phase combinations: cis-cis, cis-trans, trans-cis, and trans-trans.
To Specify the Linkage Phase Data Set:
The method used for this specification can vary depending on whether JMP is connected to SAS on your local machine or connected to SAS on a server. You should refer to the Specifying Folders, Files, and Data Sets documentation for detailed information.
To View the Contents of the Specified Data Set:
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Click Open.