JMP Genomics Starter | Expression | Normalization (Next-Gen Only)

Click on a button corresponding to an expression normalization (next-gen only) process. Refer to the table below for guidance.

Normalizing RNA-seq count data using the Kernel Density Mean of M component (KDMM) scaling methodCaution: This process can be computationally intensive for large data sets. Normalizing RNA-seq count data based on the reads per million (RPM) method (raw read count / total mapped reads * 1,000,000) Normalizing RNA-seq count data using the Trimmed Mean of M component (TMM) scaling methodCaution: This process can be computationally intensive for large data sets. Normalizing RNA-seq count data by applying a scaling factor based on the upper quartile to scale each columnSee Expression for other subcategories.