JMP Life Sciences Programming Guide | Macros Available for JMP Life Sciences Processes | Macro Descriptions | InputEngineMacros

InputEngineMacros
InputEngineMacros.sas defines the following macros for input engine processes:
%DesignParse
This macro imports the experimental design table (required for certain IEs) to extract the experimental information and the file name of each raw data file.
%DATParse
This macro imports the files with a data platform of Agilent (.txt), GenePix (.gpr), QuantArray (.txt), and Scanalyze (.dat) and combines them with the information from the experimental design table into a stacked SAS data set.
%CDFParse
This macro imports Affymetrix CDF file (text version) into a SAS data set, which is used to decode Affymetrix .cel and .chp files.
%CELParse
This macro imports Affymetrix .cel files (probe data stored in text or binary versions), which are based on the corresponding CDF file and combines them with the information from the experimental design table into a stacked SAS data set.
%CHPParse
This macro imports Affymetrix .chp files (signal summarized data), which are based on the corresponding CDF file and combines them with the information from the experimental design table into a stacked SAS data set.
%TableParse
This macro imports raw data files stored in text (tab delimited or comma separated), Excel, or SAS data set formats and combines them with the information from the experimental design table into a stacked SAS data set.
%Skip_Header_Import
This macro is used for Agilent (.txt) and GenePix (.gpr) IEs.
%Skip_Header_Import_2
This macro is used for the Import Individual Text, CSV, or Excel Files process, and the ScanAlyze IEs.
%CheckInputs
This macro checks certain required input parameters for the IEs that require an experiment design file.
%BeforeDataParse
This macro invokes DesignParse.
%AfterDataParse
This macro checks the final combined data set.
%Packaging
This macro wraps up package macros.