The following sources are referenced in the Life Sciences book.
Batista, L. G., V. H. Mello et al. (2022). “Genomic prediction with allele dosage information in highly polyploid species.” Theor. Appl. Gen. 135(2):723–739.
Botstein, D., R. L. White, M. Skolnick, and R. W. Davis. (1980). “Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms.” American Journal of Human Genetics 32:314–331.
Cabreros, I, and J.D. Storey. (2019). A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis. Genetics 212: 1009–1029.
Endelman, J. B., and J. L. Jannink. (2012). “Shrinkage Estimation of the Realized Relationship Matrix.” G3 Genes Genomes Genetics 2(11):1405–13 DOI: 10.1534/g3.112.004259.
Hildebrand, C. E., D. C. Torney, and R. P. Wagner. (1992). “Informativeness of Polymorphic DNA Markers.” Los Alamos Science 20:100–102.
Jin, W., R. M. Riley, et al. (2001). The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nature Genetics 29: 389-395.
Money D, Gardner K, Migicovsky Z, Schwaninger H, Zhong GY, Myles S. LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms. G3 (Bethesda). 2015 Sep 15;5(11):2383-90. doi: 10.1534/g3.115.021667. PMID: 26377960; PMCID: PMC4632058.
Piepho, H. P. 2009. “Ridge Regression and Extensions for Genomewide Selection in Maize.” Crop Science 49:1165–1176. DOI: 10.2135/cropsci2008.10.0595.
Su, G., O. F. Christensen, Tage Ostersen, M. Henryon, and M. L. Lund. (2012). “Estimating Additive and Non-Additive Genetic Variances and Predicting Genetic Merits Using Genome-Wide Dense Single Nucleotide Polymorphism Markers.” PlosONE 7(9):e45293. DOI: 10.1371/journal.pone.0045293.
Wang, J., Z. Zhou, Z. Zhang et al. (2018). “Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits.” Heredity 121:648–662. DOI: https://doi.org/10.1038/s41437-018-0075-0.
Weir, B. S. (1979). “Inferences about Linkage Disequilibrium.” Biometrics 35:235–254.
Weir, B. S. (1996). Genetic Data Analysis II. Sunderland, MA: Sinauer Associates.
VanRaden, P. M. (2008). “Efficient Methods to Compute Genomic Predictions.” Journal of Dairy Science 91:4414–4423.
Vitezica, Zulma, L. Varona, and A. Legarra. (2013). “On the Additive and Dominant Variance and Covariance of Individuals Within the Genomic Selection Scope.” Genetics 195:1223–1230.
Yu, J., G. Pressoir,W. Briggs et al. (2006). “A unified mixed-model method for association mapping that accounts for multiple levels of relatedness.” Nature Genetics 38:203–208. DOI: https://doi.org/10.1038/ng1702.
Zaykin, D. (2004). “Bounds and Normalization of the Composite Linkage Disequilibrium Coefficient.” Genetic Epidemiology 27:252–257.