Step-by-Step Guide

Association Analysis with SSR Markers with JMP^® Genomics 5.1

In addition to the variety of genetic marker analysis tools for di-allelic markers (SNPs), JMP Genomics also provides tools appropriate for multi-allelic markers such as SSRs. This step-by-step guide illustrates how to format an SSR data set for analysis in JMP Genomics and reviews the use of Q-K analysis methods (initially developed for numerically coded SNP markers) with a rice SSR data set. You may use the link on this page to download the data sets and follow the detailed instructions in the guide to replicate this analysis in your copy of JMP Genomics 5.1.